action firebrowse_thresholded {
  label: "Retrieve all thresholded by genes Gistic2 results."
  description: "This service provides access to the Gistic2 all_thresholded_by_genes.txt output data. A gene-level table of discrete amplification and deletion indicators for all samples. A table value of 0 means no amplification or deletion above the threshold. Amplifications are positive numbers: 1 means amplification above the amplification threshold; 2 means amplifications larger to the arm level amplifications observed for the sample. Deletions are represented by negative table values: -1 represents deletion beyond the threshold; -2 means deletions greater than the minimum arm-level deletion observed for the sample. Results maybe filtered by cohort, gene or barcode, but at least one gene or barcode must be supplied."
  provider: firebrowse
  method: GET
  path: "/Analyses/CopyNumber/Genes/Thresholded"
  encoding: json
  input: {
    type: "object"
    properties: {
      cohort: {
        type: "string"
      }
      format: {
        type: "string"
      }
      gene: {
        type: "string"
      }
      page: {
        type: "string"
      }
      page_size: {
        type: "string"
      }
      sort_by: {
        type: "string"
      }
      tcga_participant_barcode: {
        type: "string"
      }
    }
    additionalProperties: false
  }
  output: {
    type: "object"
    additionalProperties: true
  }
}