action firebrowse_maf {
label: "Retrieve MutSig final analysis MAF."
description: "This service returns columns from the MAF generated by MutSig. Results may be filtered by gene, cohort, tool, or barcode, but at least one gene OR barcode OR cohort must be given. By default a subset consisting of the most commonly used columns will be returned, but that can be modified with the column parameter. Specifying 'all' in this parameter is a convenient way to return every column of the respective MAF, and has precedence over any any other column selection expression. The complete list of column names that may be specified is given here. For more information on the mutation data, and how it is processed by Firehose, please consult the pipeline documentation."
provider: firebrowse
method: GET
path: "/Analyses/Mutation/MAF"
encoding: json
input: {
type: "object"
properties: {
cohort: {
type: "string"
}
column: {
type: "string"
}
format: {
type: "string"
}
gene: {
type: "string"
}
page: {
type: "string"
}
page_size: {
type: "string"
}
sort_by: {
type: "string"
}
tcga_participant_barcode: {
type: "string"
}
tool: {
type: "string"
}
}
additionalProperties: false
}
output: {
type: "object"
additionalProperties: true
}
}